R is a free software environment for statistical computing and graphics.
Which versions of R are available?
There are four version of R available, 3.3.3, 3.4.2, 3.4.3 and 3.5.3
Usage
module load r-project/3.3.3
module load r-project/3.4.2
module load anaconda/python3
module load r-project/3.5.3
module load r-bio/3.5.3
How to install R packages?
A variety of R packages are installed however it is recommended that users install packages (newer and updated versions) in their own home directory.
The r-project/3.x.y modules sets up a variable, R_LIBS, to install packages in your home directory. Make sure the R_LIBS directory exists
mkdir -p ${R_LIBS}
Start interactive R session and install package using the command
install.packages('packagename')
Alternatively, you can add install.packages('packagename') within your R script
If you get an error installing packages locally, then use the command
install.packages('packagename',lib=Sys.getenv("R_LIBS"))
Installed Packages
Package | 3.3.3 | 3.4.2 | 3.4.3 | 3.5.3 |
|---|---|---|---|---|
abind | 1.4-5 | 1.4-5 | ||
askpass | 1.1 | 1.1 | 1.1 | |
assertthat | 0.2.0 | 0.2.0 | 0.2.0 | 0.2.0 |
backports | 1.1.2 | 1.1.1 | 1.1.2 | 1.1.3 |
base | 3.3.3 | 3.4.2 | 3.4.3 | 3.5.3 |
base64enc | 0.1-3 | 0.1-3 | 0.1-3 | 0.1-3 |
BH | 1.65.0-1 | 1.65.0-1 | 1.65.0-1 | 1.69.0-1 |
bindr | 0.1 | 0.1 | 0.1 | |
bindrcpp | 0.2 | 0.2 | 0.2 | |
bitops | 1.0-6 | 1.0-6 | 1.0-6 | |
boot | 1.3-18 | 1.3-20 | 1.3-20 | 1.3-20 |
broom | 0.4.3 | 0.4.3 | 0.4.3 | 0.5.1 |
callr | 3.2.0 | 2.0.1 | 1.0.0 | 3.1.1 |
car | 2.1-6 | |||
caret | 6.0-78 | |||
caTools | 1.17.1.2 | 1.17.1 | 1.17.1 | |
cellranger | 1.1.0 | 1.1.0 | 1.1.0 | 1.1.0 |
chron | 2.3-51 | |||
class | 7.3-14 | 7.3-14 | 7.3-14 | 7.3-15 |
cli | 1.0.0 | 1.0.0 | 1.0.0 | 1.0.1 |
clipr | 0.4.0 | 0.5.0 | 0.4.0 | 0.5.0 |
clisymbols | 1.2.0 | 1.2.0 | 1.2.0 | |
cluster | 2.0.5 | 2.0.6 | 2.0.6 | 2.0.7-1 |
codetools | 0.2-15 | 0.2-15 | 0.2-15 | 0.2-16 |
colorspace | 1.3-2 | 1.3-2 | 1.3-2 | 1.4-0 |
compiler | 3.3.3 | 3.4.2 | 3.4.3 | 3.5.3 |
crayon | 1.3.4 | 1.3.4 | 1.3.4 | 1.3.4 |
curl | 3.1 | 3.1 | 3.1 | 3.3 |
CVST | 0.2-1 | |||
datasets | 3.3.3 | 3.4.2 | 3.4.3 | 3.5.3 |
data.table | 1.10.4-3 | |||
DBI | 0.7 | 0.7 | 0.7 | 1.0.0 |
dbplyr | 1.2.0 | 1.2.0 | 1.1.0 | 1.3.0 |
ddalpha | 1.3.1 | |||
debugme | 1.1.0 | 1.1.0 | ||
DEoptimR | 1.0-8 | |||
desc | 1.2.0 | 1.2.0 | 1.2.0 | |
devtools | 2.0.1 | 2.0.1 | ||
dichromat | 2.0-0 | 2.0-0 | 2.0-0 | |
digest | 0.6.14 | 0.6.12 | 0.6.13 | 0.6.18 |
dimRed | 0.1.0 | |||
dplyr | 0.7.4 | 0.7.4 | 0.7.4 | 0.8.0.1 |
DRR | 0.0.2 | |||
dygraphs | 1.1.1.6 | 1.1.1.4 | ||
ellipsis | 0.1.0 | 0.1.0 | 0.1.0 | |
evaluate | 0.10.1 | 0.10.1 | 0.10.1 | 0.13 |
fansi | 0.4.0 | 0.4.0 | 0.4.0 | |
flexdashboard | 0.5.1.1 | 0.5.1 | ||
forcats | 0.2.0 | 0.2.0 | 0.2.0 | 0.4.0 |
foreach | 1.4.4 | |||
foreign | 0.8-67 | 0.8-69 | 0.8-69 | 0.8-71 |
formatR | 1.5 | |||
fs | 1.2.6 | 1.2.7 | 1.2.6 | |
generics | 0.0.2 | 0.0.2 | 0.0.2 | |
ggplot2 | 2.2.1 | 2.2.1 | 2.2.1 | 3.1.0 |
gh | 1.0.1 | 1.0.1 | 1.0.1 | |
git2r | 0.24.0 | 0.25.2 | 0.24.0 | |
glmnet | 2.0-13 | |||
glue | 1.2.0 | 1.2.0 | 1.2.0 | 1.3.1 |
gower | 0.1.2 | |||
graphics | 3.3.3 | 3.4.2 | 3.4.3 | 3.5.3 |
grDevices | 3.3.3 | 3.4.2 | 3.4.3 | 3.5.3 |
grid | 3.3.3 | 3.4.2 | 3.4.3 | 3.5.3 |
gtable | 0.2.0 | 0.2.0 | 0.2.0 | 0.2.0 |
gtools | 3.8.1 | 3.5.0 | ||
haven | 1.1.1 | 1.1.1 | 1.1.0 | 2.1.0 |
hexbin | 1.27.1 | |||
highr | 0.6 | 0.6 | 0.6 | 0.7 |
hms | 0.4.0 | 0.4.1 | 0.4.0 | 0.4.2 |
htmltools | 0.3.6 | 0.3.6 | 0.3.6 | 0.3.6 |
htmlwidgets | 1.3 | 0.9 | 0.9 | |
httpuv | 1.5.1 | 1.3.5 | 1.3.5 | |
httr | 1.3.1 | 1.3.1 | 1.3.1 | 1.4.0 |
ini | 0.3.1 | 0.3.1 | 0.3.1 | |
ipred | 0.9-6 | |||
IRdisplay | 0.4.4 | |||
IRkernel | 0.8.11 | |||
iterators | 1.0.9 | |||
jsonlite | 1.5 | 1.5 | 1.5 | 1.6 |
kernlab | 0.9-25 | |||
KernSmooth | 2.23-15 | 2.23-15 | 2.23-15 | 2.23-15 |
knitr | 1.18 | 1.19 | 1.18 | 1.22 |
labeling | 0.3 | 0.3 | 0.3 | 0.3 |
later | 0.8.0 | |||
lattice | 0.20-34 | 0.20-35 | 0.20-35 | 0.20-38 |
lava | 1.5.1 | |||
lazyeval | 0.2.1 | 0.2.0 | 0.2.1 | 0.2.1 |
lme4 | 1.1-15 | |||
lubridate | 1.7.1 | 1.7.2 | 1.7.1 | 1.7.4 |
magrittr | 1.5 | 1.5 | 1.5 | 1.5 |
maps | 3.2.0 | |||
markdown | 0.8 | 0.8 | 0.8 | 0.9 |
MASS | 7.3-45 | 7.3-47 | 7.3-48 | 7.3-51.1 |
Matrix | 1.2-8 | 1.2-11 | 1.2-12 | 1.2-15 |
MatrixModels | 0.4-1 | |||
matrixStats | 0.54.0 | 0.53.1 | ||
memoise | 1.1.0 | 1.1.0 | 1.1.0 | |
methods | 3.3.3 | 3.4.2 | 3.4.3 | 3.5.3 |
mgcv | 1.8-17 | 1.8-20 | 1.8-22 | 1.8-27 |
mime | 0.5 | 0.5 | 0.5 | 0.6 |
minqa | 1.2.4 | |||
mnormt | 1.5-5 | 1.5-5 | 1.5-5 | |
ModelMetrics | 1.1.0 | |||
modelr | 0.1.1 | 0.1.1 | 0.1.1 | 0.1.4 |
munsell | 0.4.3 | 0.4.3 | 0.4.3 | 0.5.0 |
nlme | 3.1-131 | 3.1-131 | 3.1-131 | 3.1-137 |
nloptr | 1.0.4 | |||
nnet | 7.3-12 | 7.3-12 | 7.3-12 | 7.3-12 |
numDeriv | 2016.8-1 | |||
openssl | 0.9.9 | 0.9.9 | 0.9.9 | 1.2.2 |
padr | 0.4.1 | 0.4.0 | ||
parallel | 3.3.3 | 3.4.2 | 3.4.3 | 3.5.3 |
pbdZMQ | 0.3-0 | |||
pbkrtest | 0.4-7 | |||
pillar | 1.1.0 | 1.1.0 | 1.0.1 | 1.3.1 |
pkgbuild | 1.0.2 | 1.0.3 | 1.0.2 | |
pkgconfig | 2.0.1 | 2.0.1 | 2.0.1 | 2.0.2 |
pkgload | 1.0.2 | 1.0.2 | 1.0.2 | |
plogr | 0.1-1 | 0.1-1 | 0.1-1 | 0.2.0 |
plyr | 1.8.4 | 1.8.4 | 1.8.4 | 1.8.4 |
png | 0.1-7 | 0.1-7 | ||
pracma | 2.2.5 | 2.1.4 | ||
praise | 1.0.0 | 1.0.0 | ||
prettyunits | 1.0.2 | 1.0.2 | 1.0.2 | |
processx | 3.3.0 | 3.3.0 | 3.3.0 | |
prodlim | 1.6.1 | |||
progress | 1.2.0 | 1.2.0 | 1.2.0 | |
promises | 1.0.1 | |||
proto | 1.0.0 | |||
ps | 1.3.0 | 1.3.0 | 1.3.0 | |
psych | 1.7.8 | 1.7.8 | 1.7.8 | |
purrr | 0.2.4 | 0.2.4 | 0.2.4 | 0.3.1 |
quantmod | 0.4-12 | |||
quantreg | 5.34 | |||
R6 | 2.2.2 | 2.2.2 | 2.2.2 | 2.4.0 |
randomForest | 4.6-12 | |||
rbokeh | 0.6.3 | |||
rcmdcheck | 1.3.2 | 1.3.2 | 1.3.2 | |
RColorBrewer | 1.1-2 | 1.1-2 | 1.1-2 | 1.1-2 |
Rcpp | 0.12.15 | 0.12.13 | 0.12.14 | 1.0.0 |
RcppEigen | 0.3.3.3.1 | |||
RcppRoll | 0.2.2 | |||
readr | 1.1.1 | 1.1.1 | 1.1.1 | 1.3.1 |
readxl | 1.0.0 | 1.0.0 | 1.0.0 | 1.3.1 |
recipes | 0.1.1 | |||
rematch | 1.0.1 | 1.0.1 | 1.0.1 | 1.0.1 |
remotes | 2.0.2 | 2.0.4 | 2.0.2 | |
repr | 0.12.0 | |||
reprex | 0.1.1 | 0.1.2 | 0.1.1 | 0.2.1 |
reshape2 | 1.4.3 | 1.4.2 | 1.4.3 | 1.4.3 |
RJSONIO | 1.3-0 | |||
rlang | 0.1.6 | 0.1.6 | 0.1.6 | 0.3.1 |
rmarkdown | 1.8 | 1.6 | 1.8 | 1.12 |
R.matlab | 3.6.2 | 3.6.1 | ||
R.methodsS3 | 1.7.1 | 1.7.1 | ||
robustbase | 0.92-8 | |||
R.oo | 1.22.0 | 1.21.0 | ||
rpart | 4.1-10 | 4.1-11 | 4.1-11 | 4.1-13 |
rprojroot | 1.3-2 | 1.2 | 1.3-1 | 1.3-2 |
rstudioapi | 0.7 | 0.7 | 0.7 | 0.9.0 |
R.utils | 2.8.0 | 2.5.0 | ||
rvest | 0.3.2 | 0.3.2 | 0.3.2 | 0.3.2 |
rzmq | 0.9.3 | |||
scales | 0.5.0 | 0.5.0 | 0.5.0 | 1.0.0 |
selectr | 0.3-1 | 0.3-1 | 0.3-1 | 0.4-1 |
sessioninfo | 1.1.1 | 1.1.1 | 1.1.1 | |
sfsmisc | 1.1-1 | |||
shiny | 1.3.0 | 1.0.5 | 1.0.5 | |
sourcetools | 0.1.7 | 0.1.6 | 0.1.6 | |
SparseM | 1.77 | |||
spatial | 7.3-11 | 7.3-11 | 7.3-11 | 7.3-11 |
splines | 3.3.3 | 3.4.2 | 3.4.3 | 3.5.3 |
stats | 3.3.3 | 3.4.2 | 3.4.3 | 3.5.3 |
stats4 | 3.3.3 | 3.4.2 | 3.4.3 | 3.5.3 |
stringi | 1.1.6 | 1.1.5 | 1.1.6 | 1.4.3 |
stringr | 1.2.0 | 1.2.0 | 1.2.0 | 1.4.0 |
survival | 2.40-1 | 2.41-3 | 2.41-3 | 2.43-3 |
sys | 3.1 | 3.1 | 3.1 | |
tcltk | 3.3.3 | 3.4.2 | 3.4.3 | 3.5.3 |
testthat | 2.0.1 | 2.0.0 | ||
tibble | 1.4.1 | 1.4.2 | 1.4.1 | 2.0.1 |
tidyr | 0.7.2 | 0.8.0 | 0.7.2 | 0.8.3 |
tidyselect | 0.2.3 | 0.2.3 | 0.2.3 | 0.2.5 |
tidyverse | 1.2.1 | 1.2.1 | 1.2.1 | 1.2.1 |
timeDate | 3042.101 | |||
tinytex | 0.11 | 0.11 | 0.11 | |
tools | 3.3.3 | 3.4.2 | 3.4.3 | 3.5.3 |
TTR | 0.23-2 | |||
usethis | 1.4.0 | 1.4.0 | ||
utf8 | 1.1.3 | 1.1.3 | 1.1.2 | 1.1.4 |
utils | 3.3.3 | 3.4.2 | 3.4.3 | 3.5.3 |
uuid | 0.1-2 | |||
viridisLite | 0.2.0 | 0.2.0 | 0.2.0 | 0.3.0 |
whisker | 0.3-2 | 0.3-2 | 0.3-2 | 0.3-2 |
withr | 2.1.2 | 2.1.2 | 2.1.1 | 2.1.2 |
xfun | 0.6 | 0.6 | 0.5 | |
xml2 | 1.1.1 | 1.2.0 | 1.1.1 | 1.2.0 |
xopen | 1.0.0 | 1.0.0 | 1.0.0 | |
xtable | 1.8-3 | 1.8-2 | 1.8-2 | |
xts | 0.11-2 | 0.10-1 | 0.10-1 | |
yaml | 2.1.16 | 2.1.14 | 2.1.16 | 2.2.0 |
zoo | 1.8-5 | 1.8-0 | 1.8-0 |