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R is a free software environment for statistical computing and graphics.

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R packages are built using SPACK optimized for the underlying CPU architecture or binary installs using Conda. Applications built by RC staff that are dependent on R use the SPACK built R packages.

Info
SeeThe `conda/spark` module was built for use with Apache Spark for list of packages in the spark module. and provides Python packages such as pyspark

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title	Package List (as of Dec 10, 2021)

Package	4.0.3 SPACK	4.0.5 Conda	4.1.1 SPARK
abind		1.4-5	1.4-5
acepack	1.4.1
amap	0.8-17
animation	2.6
annotate	1.62.0
AnnotationDbi	1.46.1
ape	5.3
argparse	2.0.1
askpass	1.1	1.1	1.1
assertthat	0.2.1	0.2.1	0.2.1
backports	1.1.4	1.4.0

base

1.4.0
base	4.0.3	4.0.5	4.1.1
base64enc	0.1-3	0.1-3	0.1-3
BBmisc	1.11
BH	1.69.0-1
BiasedUrn	1.07
bibtex	0.4.2
bigmemory	4.5.36
bigmemory.sri	0.1.3
Biobase	2.44.0
BiocGenerics	0.34.0
BiocManager	1.30.10	1.30.16	1.30.16
BiocParallel	1.18.1
BiocVersion			3.14.0
biomaRt	2.40.5
Biostrings	2.52.0
bit	1.1-14	4.0.4	4.0.4
bit64	0.9-7	4.0.5	4.0.5
bitops	1.0-6	1.0-7	1.0-7
blob	1.2.0	1.2.2	1.2.2
boot	1.3-27	1.3-28	1.3-28
brew	1.0-6
brio		1.1.3	1.1.3
broom	0.5.2	0.7.10	0.7.10
bslib		0.3.1	0.3.1
cachem		1.0.6	1.0.6
callr	3.4.3	3.7.0	3.7.0
car		3.0-12	3.0-12
carData		3.0-4	3.0-4
caret	6.0-84	6.0-90	6.0-90
caTools	1.17.1.2
cellranger	1.1.0	1.1.0	1.1.0
checkmate	1.9.4
chron	2.3-53
class	7.3-18	7.3-19	7.3-19
cli	2.0.2	3.1.0	3.1.0
clipr	0.7.0	0.7.1	0.7.1
cluster	2.1.1	2.1.2

clusterGeneration

2.1.2
clusterGeneration	1.3.4
coda	0.19-3
codetools	0.2-18	0.2-18	0.2-18
colorspace	1.4-1	2.0-2	2.0-2
combinat	0.0-8
commonmark	1.7	1.7	1.7
compiler	4.0.3	4.0.5	4.1.1
config		0.3.1	0.3.1
conquer		1.2.1	1.2.1
corrplot		0.92	0.92
covr	3.5.0
cowplot	1.0.0	1.1.1	1.1.1
cpp11		0.4.2	0.4.2
crayon	1.3.4	1.4.2	1.4.2
crosstalk	1.0.0	1.2.0	1.2.0
crul		1.2.0	1.2.0
ctc	1.58.0
curl	4.3	4.3.2	4.3.2
data.table	1.12.8	1.14.2	1.14.2
datasets	4.0.3	4.0.5	4.1.1
DBI	1.1.0	1.1.1	1.1.1
dbplyr	1.4.2	2.1.1	2.1.1
DelayedArray	0.10.0
dendextend	1.12.0
desc	1.2.0	1.4.0	1.4.0
DESeq2	1.24.0
devtools	2.3.0
DEXSeq	1.36.0
DiagrammeR		1.0.6.1	1.0.6.1
diffobj		0.3.5	0.3.5
digest	0.6.25	0.6.29	0.6.29
doParallel	1.0.15

dplyr


downloader		0.

8.3

4

1.

0.4
dplyr	0.8.3	1.0.7	1.0.7
dqrng	0.2.1
DT	0.13	0.20	0.20
dtplyr		1.2.0	1.2.0
dygraphs	1.1.1.6	1.1.1.6	1.1.1.6
e1071		1.7-9	1.7-9
edgeR	3.26.8
ellipsis	0.3.0	0.3.2	0.3.2
evaluate	0.14	0.14	0.14
expm	0.999-4
fansi	0.4.0	0.5.0	0.4.2
farver		2.1.0	2.1.0
fastcluster	1.1.25
fastmap		1.1.0	1.1.0
fastmatch	1.1-0
findpython	1.0.5
fitdistrplus	1.0-14
flexdashboard		0.5.2

FNN

0.5.2
FNN	1.1.3
fontawesome		0.2.2	0.2.2
forcats	0.4.0	0.5.1	0.5.1
foreach	1.4.7	1.5.1	1.5.1
foreign	0.8-81	0.8-81	0.8-81
forge		0.2.0	0.2.0
formatR	1.7	1.11	1.11
Formula	1.2-3
fs	1.3.1	1.5.2	1.5.2
futile.logger	1.4.3
futile.options	1.0.1
future	1.14.0	1.23.0	1.23.0
future.apply	1.3.0	1.8.1

gargle

1.

2

8.

0

1

gbRd

gapminder

0.

4-11

gdata

2.18.

3.0

gdtools

0.

2.

3.0
gargle		1.2.0	1.2.0
gbRd	0.4-11
gdata	2.18.0
gdtools		0.2.3	0.2.3
genefilter	1.72.1
geneLenDataBase	1.20.0
geneplotter	1.62.0
generics	0.0.2	0.1.1	0.1.1
GenomeInfoDb	1.20.0
GenomeInfoDbData	1.2.1
GenomicAlignments	1.20.1
GenomicFeatures	1.36.4
GenomicRanges	1.36.1
gganimate		1.0.7	1.0.7
ggdendro	0.1-20
ggplot2	3.2.0	3.3.5	3.3.5
ggpubr		0.4.0

ggrepel

0.

8.2.

4.0
ggrepel	0.8.1	0.9.1	0.9.1
ggridges	0.5.1
ggsci		2.9	2.9
ggsignif		0.6.3	0.6.3
ggthemes		4.2.4	4.2.4
ggvis		0.4.7	0.4.7
gh	1.1.0
gistr	0.4.2	0.9.0	0.9.0
git2r	0.27.1
Glimma	1.12.0
glmnet		4.1-2	4.1-2
globals	0.12.4	0.14.0	0.14.0
glue	1.4.1	1.5.1

gmodels

1.5.1
gmodels	2.18.1
GO.db	3.4.1
googleAuthR			1.4.0
googledrive		2.0.0	2.0.0
googlesheets4		1.0.0	1.0.0
googleVis		0.6.10	0.6.10
GOplot	1.0.2
goseq	1.36.0
gower	0.2.1	0.2.2	0.2.2
gplots	3.0.1.1
graphics	4.0.3	4.0.5	4.1.1
grDevices	4.0.3	4.0.5	4.1.1
grid	4.0.3	4.0.5	4.1.1
gridExtra	2.3	2.3	2.3
gsubfn	0.7
gtable	0.3.0	0.3.0

gtools

0.

0.3.0
gtools	3.8.1
haven	2.1.1	2.4.3	2.4.3
hdf5r	1.2.0
here		1.0.1	1.0.1
hexbin	1.27.3	1.28.2	1.28.2
highr	0.8	0.9	0.9
Hmisc	4.4-0
hms	0.5.0	1.1.1	1.1.1
htmlTable	1.13.1
htmltools	0.3.6	0.5.2	0.5.2
htmlwidgets	1.3	1.5.4	1.5.4
httpcode		0.3.0	0.3.0
httpuv	1.5.1	1.6.3	1.6.3
httr	1.4.1	1.4.2	1.4.2
hwriter	1.3.2
ica	1.0-2
ids		1.0.1	1.0.1
igraph	1.2.4.1

ini

2.

1.2.6	1.2.9
influenceR		0.1.0.1	0.1.0.1
ini	0.3.1
inline	0.3.15
ipred	0.9-9	0.9-12	0.9-12
IRanges	2.22.2
IRdisplay		1.0	1.0
IRkernel		1.2	1.2
irlba	2.3.3
isoband		0.2.5	0.2.5
iterators	1.0.12	1.0.13	1.0.13
janitor	1.2.0
jquerylib		0.1.4	0.1.4
jsonlite	1.6.1	1.7.2	1.7.2
kableExtra		1.3.4

KernSmooth

1.3.4
KernSmooth	2.23-18	2.23-20	2.23-20
knitr	1.28	1.36	1.35
labeling	0.3	0.4.2	0.4.2
Lahman		9.0-0	9.0-0
lambda.r	1.2.3
later	0.8.0	1.2.0	1.2.0
lattice	0.20-41	0.20-45	0.20-45
latticeExtra	0.6-28
lava	1.6.6	1.6.10	1.6.10
lazyeval	0.2.2	0.2.2

leiden

0.

3

2.

1

2

lifecycle

leaflet

13

2.0.4.1

limma

2.

40.

0.4.1
leaflet.providers		1.9.0	1.9.0
leiden	0.3.1
lifecycle		1.0.1	1.0.1
limma	3.40.6
listenv	0.7.0	0.8.0	0.8.0
lme4	1.1-21	1.1-27.1	1.1-27.1
lmtest	0.9-37
lobstr		1.1.1	1.1.1
locfit	1.5-9.1
loo	2.1.0
lsei	1.2-0
lubridate	1.7.4	1.8.0

magick

1.8.0
magick	2.1	2.7.3	2.

1

7.3
magrittr	1.5	2.0.1	2.0.1
maps	3.3.0	3.4.0	3.4.0
maptools		1.1-2	1.1-2
markdown	1.1	1.1	1.1
MASS	7.3-53.1	7.3-54	7.3-54
Matrix	1.3-2	1.3-4	1.3-4
MatrixModels		0.5-0	0.5-0
matrixStats	0.55.0	0.61.0	0.61.0
memoise	1.1.0		2.0.1
metap	1.1
methods	4.0.3	4.0.5	4.1.1
mgcv	1.8-34	1.8-38	1.8-38

mime

0.7

0.

7

12	0.12
minqa	1.2.4	1.2.4	1.2.4
mlr	2.15.0
mnormt	1.5-5
ModelMetrics	1.2.2	1.2.2.2	1.2.2.2
modelr	0.1.5	0.1.8	0.1.8
multtest	2.40.0
munsell	0.5.0	0.5.0	0.5.0
ncdf4	1.16.1
nlme	3.1-152	3.1-150	3.1-153
nloptr	1.2.1	1.2.2.2	1.2.2.3
nnet	7.3-15	7.3-16	7.3-16
npsurv	0.4-0
numDeriv	2016.8-

1.12016.8-1.1

1.1	2016.8-1.1	2016.8-1.1
nycflights13		1.0.2	1.0.2
openssl	1.4.1	1.4.5	1.4.5
openxlsx	4.1.0.1	4.2.4	4.2.4
pacman	0.5.1	0.5.1	0.5.1
parallel	4.0.3	4.0.5	4.1.1
parallelly		1.29.0	1.29.0
parallelMap	1.4
ParamHelpers	1.12
pbapply	1.4-1
pbdZMQ		0.3-6	0.3-6
pbkrtest		0

.5

.5.1	0.5.1
pdftools		3.0.1	3.0.1
phangorn	2.5.5
phytools	0.6-99
pillar	1.4.2	1.6.4	1.6.4
pkgbuild	1.0.8
pkgconfig	2.0.2	2.0.3	2.0.3
pkgload	1.0.2	1.2.4	1.2.4
plogr	0.2.0
plotly	4.9.0	4.10.0	4.10.0
plotrix	3.7-6
plyr	1.8.4	1.8.6	1.8.6
png	0.1-7	0.1-7	0.1-7
polynom		1.4-0	1.4-0
praise	1.0.0	1.0.0	1.0.0
prettyunits	1.0.2	1.1.1	1.1.1
pROC		1.18.0	1.18.0
processx	3.4.1	3.5.2	3.5.2
prodlim	2018.

04.18

04.18	2019.11.13	2019.11.13
progress	1.2.2	1.2.2	1.2.2
progressr		0.9.0	0.9.0
promises	1.0.1	1.2.0.1	1.2.0.1
proto	1.0.0
proxy		0.4-26	0.4-26
pryr	0.1.4	0.1.5	0.1.5
ps	1.3.0	1.6.0	1.6.0
purrr	0.3.4	0.3.4	0.3.4
qpdf		1.1	1.1
quadprog	1.5-7
quantmod	0.4-15	0.4.18	0.4.18
quantreg		5.86	5.86
qvalue	2.16.0
R.methodsS3	1.7.1
R.oo	1.23.0
R.utils	2.9.0

r2d3


r2d3		0.2.5	0.2.5
R6	2.4.0	2.5.1	2.5.1
randomForest	4.6-14	4.6-14	4.6-14
RANN	2.6.1
rappdirs	0.3.1	0.3.3	0.3.3
raster		3.4-13	3.5-2
rbokeh	0.5.0	0.5.2	0.5.2
rcmdcheck	1.3.3
RColorBrewer	1.1-2	1.1-2	1.1-2
Rcpp	1.0.4.6	1.0.7	1.0.7
RcppAnnoy	0.0.12
RcppArmadillo	0.9.600.4.0	0.10.7.

3

3.0	0.10.7.3.0
RcppEigen	0.3.3.5.0

RcppEigen

0.3.3.

5

9.

02

1	0.3.3.9.1
RcppParallel	4.4.3
RcppProgress	0.4.1
RCurl	1.98-1.2	1.98-1.5	1.98-1.5
Rdpack	0.11-0
readr	1.3.1	2.1.1	2.1.1
readxl	1.3.1	1.3.1	1.3.1
recipes	0.1.6	0.1.17	0.1.17
rematch	1.0.1	1.0.1	1.0.1
rematch2	2.1.2	2.1.2

remotes

2.1.2
remotes	2.1.1	2.4.2	2.4.2
repr		1.1.

1repr

3	1.1.3
reprex	0.3.0	2.0.1	2.0.1
reshape2	1.4.3	1.4.4	1.4.4
reticulate	1.15	1.22	1.22
rex	1.1.2
rgexf		0.16.2	0.16.2
rhdf5	2.28.1
Rhdf5lib	1.6.3
Rhtslib	1.18.1
rio		0.5.29	0.5.29
rjson		0.2.20	0.2.20
rlang	0.4.6	0.4.12	0.4.12
rmarkdown	1.14	2.11	2.11
ROCR	1.0-7
ROTS	1.12.0
roxygen2	7.1.0
rpart	4.1-15	4.1-15	4.1-15
RPostgreSQL	0.6-2
rprojroot

1.3-

1.3-2	2.0.2	2.0.2
Rsamtools	2.2.1
RSpectra	0.15-0
RSQLite	2.1.2
rstan	2.19.2
rstatix		0.7.0	0.7.0
rstudioapi	0.11	0.13	0.13
rsvd	1.0.2
rtracklayer	1.44.4
Rtsne	0.15
rversions	2.0.1
rvest	0.3.4	1.0.2	1.0.2
S4Vectors	0.26.1
sass		0.4.0	0.4.0
scales	1.0.0	1.1.1	1.1.1
scatterplot3d	0.3-41
sctransform	0.2.0
SDMTools	1.1-221.1
selectr	0.4-1	0.4-2	0.4-2
servr		0.24	0.24
sessioninfo	1.1.1
Seurat	3.1.0
shape		1.4.6	1.4.6
shiny	1.3.2	1.7.1	1.7.1
sitmo	2.0.1
sm	2.2-5.6

snakecase


snakecase	0.11.0
snow	0.4-3	0.

11.0

snow

4-4

0.4-

3

4
sourcetools	0.1.7	0.1.7	0.1.7
sp		1.4-6	1.4-6
sparklyr		1.7.3	1.7.3
SparseM		1.81	1.81
spatial		7.3-14	7.3-14
splines	4.0.3	4.0.5	4.1.1
splitstackshape	1.4.8
sqldf	0.4-11
SQUAREM	2017.10-1	2021.1	2021.1
StanHeaders	2.18.1-10
statmod	1.4.32	1.4.36	1.4.36
stats	4.0.3	4.0.5	4.1.1
stats4	4.0.3	4.0.5	4.1.1
stringi	1.4.

3

3	1.7.6	1.7.6
stringr	1.4.0	1.4.0	1.4.0
SummarizedExperiment	1.18.2
survival	3.2-7	3.2-13	3.2-13
svglite		2.0.0	2.0.0
sys	3.2	3.4	3.4
systemfonts		1.0.3	1.0.3
tcltk	4.0.3	4.0.5	4.1.1
terra			1.4-22
testthat	2.3.2	3.1.1	3.1.1
tibble	2.1.3	3.1.6	3.1.6
tidyr	0.8.3	1.1.4	1.1.4
tidyselect	0.2.5	1.1.1	1.1.1

tidyverse

1.2.1

1.

2

3.1	1.3.1
timeDate	3043.102	3043.102	3043.102
tinytex	0.15	0.35	0.35
tools	4.0.3	4.0.5	4.1.1
triebeard		0.3.0	0.3.0
tsne	0.1-3
TTR	0.23-4	0.24.2	0.24.2
tweenr		1.0.2	1.0.2
tximport	1.12.3
tximportData	1.18.0
tzdb		0.2.0	0.2.0
urltools		1.7.3	1.7.3
usethis	1.6.1
utf8	1.1.4	1.2.2	1.2.2
utils	4.0.3	4.0.5	4.1.1
uuid		1.0

.5uuid

-3	1.0-3
uwot	0.1.3
vctrs	0.2.0	0.3.8	0.3.8
vioplot	0.3.2
viridis	0.5.1	0.6.2	0.6.2
viridisLite	0.3.0	0.4.0	0.4.0
visNetwork		2.1.0	2.1.0
vroom		1.5.7	1.5.7
waldo		0.3.1	0.3.1
webshot		0.5.2	0.5.2
whisker	0.3-2
withr	2.2.0	2.4.3	2.4.3
xfun	0.

8

8	0.28	0.28
XML	3.98-1.20	3.99-0.8	3.99-0.8
xml2	1.3.2	1.3.3	1.3.3
xopen	1.0.0
xtable	1.8-4	1.8-4	1.8-4
xts	0.11-2	0.12.1	0.12.1
XVector	0.24.0
yaml	2.2.0	2.2.1	2.2.1
zeallot	0.1.0
zip	2.0.3	2.2.0	2.2.0
zlibbioc	1.30.0
zoo	1.8-6	1.8-9	1.8-9

Versions Compared

Old Version 28

New Version Current

Key