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R packages are built using SPACK optimized for the underlying CPU architecture or binary installs using Conda.  Applications built by RC staff that are dependent on R use the SPACK built R packages.


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titlePackage List


Package

4.0.3 SPACK

4.0.3 Conda

acepack

1.4.1


amap

0.8-17


animation

2.6


annotate

1.62.0


AnnotationDbi

1.46.1


ape

5.3


argparse

2.0.1


askpass

1.1

1.1

assertthat

0.2.1

0.2.1

backports

1.1.4

1.2.0

base

4.0.3

4.0.3

base64enc

0.1-3

0.1-3

BBmisc

1.11


BH

1.69.0-1


BiasedUrn

1.07


bibtex

0.4.2


bigmemory

4.5.36


bigmemory.sri

0.1.3


Biobase

2.44.0


BiocGenerics

0.34.0


BiocManager

1.30.10


BiocParallel

1.18.1


biomaRt

2.40.5


Biostrings

2.52.0


bit

1.1-14


bit64

0.9-7


bitops

1.0-6


blob

1.2.0

1.2.1

boot

1.3-23

1.3-25

boot

1.3-27

1.3-25

brew

1.0-6


brio


1.1.0

broom

0.5.2

0.7.2

callr

3.4.3

3.5.1

caret

6.0-84

6.0-86

caTools

1.17.1.2


cellranger

1.1.0

1.1.0

checkmate

1.9.4


chron

2.3-53


class

7.3-15

7.3-17

cli

2.0.2

2.2.0

clipr

0.7.0

0.7.1

cluster

2.1.0

2.1.0

cluster

2.1.1

2.1.0

clusterGeneration

1.3.4


coda

0.19-3


codetools

0.2-16

0.2-18

codetools

0.2-18

0.2-18

colorspace

1.4-1

2.0-0

combinat

0.0-8


commonmark

1.7

1.7

compiler

4.0.3

4.0.3

covr

3.5.0


cowplot

1.0.0


cpp11


0.2.4

crayon

1.3.4

1.3.4

crosstalk

1.0.0

1.1.0.1

crul


1.0.0

ctc

1.58.0


curl

4.3

4.3

data.table

1.12.8

1.13.2

datasets

4.0.3

4.0.3

DBI

1.1.0

1.1.0

dbplyr

1.4.2

2.0.0

DelayedArray

0.10.0


dendextend

1.12.0


desc

1.2.0

1.2.0

DESeq2

1.24.0


devtools

2.3.0


DEXSeq

1.36.0


diffobj


0.3.2

digest

0.6.25

0.6.27

doParallel

1.0.15


dplyr

0.8.3

1.0.2

dqrng

0.2.1


DT

0.13

0.16

dygraphs

1.1.1.6

1.1.1.6

edgeR

3.26.8


ellipsis

0.3.0

0.3.1

evaluate

0.14

0.14

expm

0.999-4


fansi

0.4.0

0.4.1

farver


2.0.3

fastcluster

1.1.25


fastmap


1.0.1

fastmatch

1.1-0


findpython

1.0.5


fitdistrplus

1.0-14


flexdashboard


0.5.2

FNN

1.1.3


forcats

0.4.0

0.5.0

foreach

1.4.7

1.5.1

foreign

0.8-72

0.8-80

foreign

0.8-81

0.8-80

formatR

1.7

1.7

Formula

1.2-3


fs

1.3.1

1.5.0

futile.logger

1.4.3


futile.options

1.0.1


future

1.14.0


future.apply

1.3.0


gbRd

0.4-11


gdata

2.18.0


genefilter

1.72.1


geneLenDataBase

1.20.0


geneplotter

1.62.0


generics

0.0.2

0.1.0

GenomeInfoDb

1.20.0


GenomeInfoDbData

1.2.1


GenomicAlignments

1.20.1


GenomicFeatures

1.36.4


GenomicRanges

1.36.1


ggdendro

0.1-20


ggplot2

3.2.0

3.3.2

ggrepel

0.8.1


ggridges

0.5.1


gh

1.1.0


gistr

0.4.2

0.9.0

git2r

0.27.1


Glimma

1.12.0


glmnet


4.0-2

globals

0.12.4


glue

1.4.1

1.4.2

gmodels

2.18.1


GO.db

3.4.1


GOplot

1.0.2



goseq

1.36.0


gower

0.2.1

0.2.2

gplots

3.0.1.1


graphics

4.0.3

4.0.3

grDevices

4.0.3

4.0.3

grid

4.0.3

4.0.3

gridExtra

2.3


gsubfn

0.7


gtable

0.3.0

0.3.0

gtools

3.8.1


haven

2.1.1

2.3.1

hdf5r

1.2.0


hexbin

1.27.3

1.28.1

highr

0.8

0.8

Hmisc

4.4-0


hms

0.5.0

0.5.3

htmlTable

1.13.1


htmltools

0.3.6

0.5.0

htmlwidgets

1.3

1.5.2

httpcode


0.3.0

httpuv

1.5.1

1.5.4

httr

1.4.1

1.4.2

hwriter

1.3.2


ica

1.0-2


igraph

1.2.4.1


ini

0.3.1


inline

0.3.15


ipred

0.9-9

0.9-9

IRanges

2.22.2


IRdisplay


0.7.0

IRkernel


1.1.1

irlba

2.3.3


isoband


0.2.2

iterators

1.0.12

1.0.13

janitor

1.2.0


jsonlite

1.6.1

1.7.1

kableExtra


1.3.1

KernSmooth

2.23-15

2.23-18

KernSmooth

2.23-18

2.23-18

knitr

1.28

1.30

labeling

0.3

0.4.2

lambda.r

1.2.3


later

0.8.0

1.1.0.1

lattice

0.20-38

0.20-41

lattice

0.20-41

0.20-41

latticeExtra

0.6-28


lava

1.6.6

1.6.8.1

lazyeval

0.2.2

0.2.2

leiden

0.3.1


lifecycle


0.2.0

limma

3.40.6


listenv

0.7.0


lme4

1.1-21


lmtest

0.9-37


locfit

1.5-9.1


loo

2.1.0


lsei

1.2-0


lubridate

1.7.4

1.7.9.2

magick

2.1


magrittr

1.5

2.0.1

maps

3.3.0

3.3.0

markdown

1.1

1.1

MASS

7.3-51.5

7.3-53

MASS

7.3-53.1

7.3-53

Matrix

1.2-17

1.2-18

Matrix

1.3-2

1.2-18

matrixStats

0.55.0


memoise

1.1.0


metap

1.1


methods

4.0.3

4.0.3

mgcv

1.8-28

1.8-33

mgcv

1.8-34

1.8-33

mime

0.7

0.9

minqa

1.2.4


mlr

2.15.0


mnormt

1.5-5


ModelMetrics

1.2.2

1.2.2.2

modelr

0.1.5

0.1.8

multtest

2.40.0


munsell

0.5.0

0.5.0

ncdf4

1.16.1


nlme

3.1-141

3.1-150

nlme

3.1-152

3.1-150

nloptr

1.2.1


nnet

7.3-12

7.3-14

nnet

7.3-15

7.3-14

npsurv

0.4-0


numDeriv

2016.8-1.1

2016.8-1.1

openssl

1.4.1

1.4.3

openxlsx

4.1.0.1


pacman

0.5.1


parallel

4.0.3

4.0.3

parallelMap

1.4


ParamHelpers

1.12


pbapply

1.4-1


pbdZMQ


0.3-3.1

phangorn

2.5.5


phytools

0.6-99


pillar

1.4.2

1.4.7

pkgbuild

1.0.8

1.1.0

pkgconfig

2.0.2

2.0.3

pkgload

1.0.2

1.1.0

plogr

0.2.0


plotly

4.9.0

4.9.2.1

plotrix

3.7-6


plyr

1.8.4

1.8.6

png

0.1-7


praise

1.0.0

1.0.0

prettyunits

1.0.2

1.1.1

pROC


1.16.2

processx

3.4.1

3.4.4

prodlim

2018.04.18

2019.11.13

progress

1.2.2

1.2.2

promises

1.0.1

1.1.1

proto

1.0.0


pryr

0.1.4

0.1.4

ps

1.3.0

1.4.0

purrr

0.3.4

0.3.4

quadprog

1.5-7


quantmod

0.4-15

0.4.17

qvalue

2.16.0


R.methodsS3

1.7.1


R.oo

1.23.0


R.utils

2.9.0


R6

2.4.0

2.5.0

randomForest

4.6-14

4.6-14

RANN

2.6.1


rappdirs

0.3.1

0.3.1

rbokeh

0.5.0

0.5.1

rcmdcheck

1.3.3


RColorBrewer

1.1-2

1.1-2

Rcpp

1.0.4.6

1.0.5

RcppAnnoy

0.0.12


RcppArmadillo

0.9.600.4.0


RcppEigen

0.3.3.5.0


RcppParallel

4.4.3


RcppProgress

0.4.1


RCurl

1.98-1.2


Rdpack

0.11-0


readr

1.3.1

1.4.0

readxl

1.3.1

1.3.1

recipes

0.1.6

0.1.15

rematch

1.0.1

1.0.1

rematch2

2.1.2

2.1.2

remotes

2.1.1


repr


1.1.0

reprex

0.3.0

0.3.0

reshape2

1.4.3

1.4.4

reticulate

1.15

1.18

rex

1.1.2


rhdf5

2.28.1


Rhdf5lib

1.6.3


Rhtslib

1.18.1


rlang

0.4.6

0.4.8

rmarkdown

1.14

2.5

ROCR

1.0-7


ROTS

1.12.0


roxygen2

7.1.0


rpart

4.1-15

4.1-15

rpart

4.1-15

4.1-15

RPostgreSQL

0.6-2


rprojroot

1.3-2

2.0.2

Rsamtools

2.2.1


RSpectra

0.15-0


RSQLite

2.1.2


rstan

2.19.2


rstudioapi

0.11

0.13

rsvd

1.0.2


rtracklayer

1.44.4


Rtsne

0.15


rversions

2.0.1


rvest

0.3.4

0.3.6

S4Vectors

0.26.1


scales

1.0.0

1.1.1

scatterplot3d

0.3-41


sctransform

0.2.0


SDMTools

1.1-221.1


selectr

0.4-1

0.4-2

sessioninfo

1.1.1


Seurat

3.1.0


shape


1.4.5

shiny

1.3.2

1.5.0

sitmo

2.0.1


sm

2.2-5.6


snakecase

0.11.0


snow

0.4-3


sourcetools

0.1.7

0.1.7

spatial


7.3-12

splines

4.0.3

4.0.3

splitstackshape

1.4.8


sqldf

0.4-11


SQUAREM

2017.10-1

2020.5

StanHeaders

2.18.1-10


statmod

1.4.32


stats

4.0.3

4.0.3

stats4

4.0.3

4.0.3

stringi

1.4.3

1.5.3

stringr

1.4.0

1.4.0

SummarizedExperiment

1.18.2


survival

3.1-12

3.2-7

survival

3.2-7

3.2-7

sys

3.2

3.4

tcltk

4.0.3

4.0.3

testthat

2.3.2

3.0.0

tibble

2.1.3

3.0.4

tidyr

0.8.3

1.1.2

tidyselect

0.2.5

1.1.0

tidyverse

1.2.1

1.3.0

timeDate

3043.102

3043.102

tinytex

0.15

0.27

tools

4.0.3

4.0.3

triebeard


0.3.0

tsne

0.1-3


TTR

0.23-4

0.24.2

tximport

1.12.3


tximportData

1.18.0


urltools


1.7.3

usethis

1.6.1


utf8

1.1.4

1.1.4

utils

4.0.3

4.0.3

uuid


0.1-4

uwot

0.1.3


vctrs

0.2.0

0.3.5

viridis

0.5.1


viridisLite

0.3.0

0.3.0

waldo


0.2.3

webshot


0.5.2

whisker

0.3-2

0.4

withr

2.2.0

2.3.0

xfun

0.8

0.19

XML

3.98-1.20


xml2

1.3.2

1.3.2

xopen

1.0.0


xtable

1.8-4

1.8-4

xts

0.11-2

0.12.1

XVector

0.24.0


yaml

2.2.0

2.2.1

zeallot

0.1.0

0.1.0

zip

2.0.3


zlibbioc

1.30.0


zoo

1.8-6

1.8-8


...