eXpress is a streaming DNA/RNA sequence quantification tool. It has initially been tested for RNA-Seq transcriptome quantification but can be used in any application where abundances of target sequences need to be estimated from short reads sequenced from them. More details, installation instructions, and the manual can be found at http://bio.math.berkeley.edu/eXpress/
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This package is built using SPACK and optimized for AVX, AVX2 and AVX512 CPUs. To use the optimized version, you need to add source /etc/profile.d/zlmod.sh to your submit script before loading any modules. By default, the AVX2 optimized version (head node is Haswell CPU) is in your path. The AVX2 optimized version will run on Skylake (enge, im2080, chem, health) and Cascade Lake (hawkcpu, hawkmem, hawkgpu, infolab) CPUs but not on Ivybridge (debug) CPUs. |
| Version | module name |
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| 1.5.2 | express/1.5.2 |
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