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R is a free software environment for statistical computing and graphics.

...

Versionmodule namebuildnotes
4.0.3r/4.0.3SPACK using gcc 8.3.1optimized for avx, avx2 and avx512
4.0.35conda/rConda packagesLoad anaconda3/2020.07 first
4.1.1conda/sparkConda packagesLoad anaconda3/2020.07 first.
For use with Apache Spark

...

R packages are built using SPACK optimized for the underlying CPU architecture or binary installs using Conda. Applications built by RC staff that are dependent on R use the SPACK built R packages.

Info

See Apache Spark for list of packages in the  the spark module. 


0.7.2
Expand
titlePackage List


Package

4.0.3 SPACK

4.0.

3

5 Conda

abind


1.4-5

acepack

1.4.1


amap

0.8-17


animation

2.6


annotate

1.62.0


AnnotationDbi

1.46.1


ape

5.3


argparse

2.0.1


askpass

1.1

1.1

assertthat

0.2.1

0.2.1

backports

1.1.4

1.

2

4.0

base

4.0.3

4.0.

3

5

base64enc

0.1-3

0.1-3

BBmisc

1.11


BH

1.69.0-1


BiasedUrn

1.07


bibtex

0.4.2


bigmemory

4.5.36


bigmemory.sri

0.1.3


Biobase

2.44.0


BiocGenerics

0.34.0


BiocManager

1.30.10


BiocParallel

1.18.1


biomaRt

2.40.5


Biostrings

2.52.0


bit

1.1-14

4.0.4

bit64

0.9-7

4.0.5

bitops

1.0-6


blob

1.2.0

1.2.

1

2

boot

1.3-

23

27

1.3-

25

28

boot

brew

1.

3

0-

27

6


brio


1.1.3

-25

brew

1.0-6

brio

1.1.0

broom

0.5.2

broom

0.5.2

0.7.10

bslib


0.3.1

cachem


1.0.6

callr

3.4.3

3

.5.1

.7.0

car


3.0-12

carData


3.0-4

caret

6.0-84

6.0-

86

90

caTools

1.17.1.2


cellranger

1.1.0

1.1.0

checkmate

1.9.4


chron

2.3-53


class

7.3-

15

18

7.3-

17

19

cli

2.0.2

2

3.

2

1.0

clipr

0.7.0

0.7.1

cluster

2.1.

02.

1

.0

cluster

2.1.

1

2

.1.0

clusterGeneration

1.3.4


coda

0.19-3


codetools

0.2-

160.2-

18

codetools

0.2-18

0.2-18

colorspace

1.4-1

2.0-

0

2

combinat

0.0-8


commonmark

1.7

1.7

compiler

4.0.3

4

.0.3

.0.5

config


0.3.1

conquer


1.2.1

corrplot


0.92

covr

3.5.0


cowplot

1.0.0

1.1.1

cpp11


0.4.2

.4

crayon

1.3.4

1.

3

4.

4

2

crosstalk

1.0.0

1.

1

2.0

.1

crul


1.

0

2.0

ctc

1.58.0


curl

4.3

4.3.2

data.table

1.12.8

1.

13

14.2

datasets

4.0.3

4.0.

3

5

DBI

1.1.0

1.1.

0

1

dbplyr

1.4.2

2.

0

1.

0

1

DelayedArray

0.10.0


dendextend

1.12.0


desc

1.2.0

1.

2

4.0

DESeq2

1.24.0


devtools

2.3.0


DEXSeq

1.36.0


diffobj


0.3.

2

5

digest

0.6.25

0.6.

27

29

doParallel

1.0.15


dplyr

0.8.3

1.0.

2

7

dqrng

0.2.1


DT

0.13

0.

16

20

dtplyr


1.2.0

dygraphs

1.1.1.6

1.1.1.6

e1071


1.7-9

edgeR

3.26.8


ellipsis

0.3.0

0.3.

1

2

evaluate

0.14

0.14

expm

0.999-4


fansi

0.4.0

0.

4

5.

1

0

farver


2.1.0

.3

fastcluster

1.1.25


fastmap


1.1.0

.1

fastmatch

1.1-0


findpython

1.0.5


fitdistrplus

1.0-14


flexdashboard


0.5.2

FNN

1.1.3


fontawesome


0.2.2

forcats

0.4.0

0.5.

0

1

foreach

1.4.7

1.5.1

foreign

0.8-

72

81

0.8-

80

81

foreign

forge


0.2.

8-81

0

.8-80

formatR

1.7

1.

7

11

Formula

1.2-3


fs

1.3.1

1.5.

0

2

futile.logger

1.4.3


futile.options

1.0.1


future

1.14.0

1.23.0

future.apply

1.3.0

1.8.1

gargle


1.2.0

gbRd

0.4-11


gdata

2.18.0


gdtools


0.2.

18.0

3

genefilter

1.72.1


geneLenDataBase

1.20.0


geneplotter

1.62.0


generics

0.0.2

0.1.

0

1

GenomeInfoDb

1.20.0


GenomeInfoDbData

1.2.1


GenomicAlignments

1.20.1


GenomicFeatures

1.36.4


GenomicRanges

1.36.1


ggdendro

0.1-20


ggplot2

3.2.0

3.3.

2

5

ggpubr


0.4.0

ggrepel

0.8.1

0.9.1

ggridges

0.5.1


ggsci


2.9

ggsignif


0.6.3

gh

1.1.0


gistr

0.4.2

0.9.0

git2r

0.27.1


Glimma

1.12.0


glmnet


4.

0

1-2

globals

0.12.4

0.14.0

glue

1.4.1

1.5.1

gmodels

2.18.1


GO.db

3.4.

2

1

gmodels


googledrive


2.

18

0.

1

0

GO.db

googlesheets4

3


1.

4

0.

1

0

GOplot

1.0.2


goseq

1.36.0


gower

0.2.1

0.2.2

gplots

3.0.1.1


graphics

4.0.3

4.0.

3

5

grDevices

4.0.3

4.0.

3

5

grid

4.0.3

4.0.

3

5

gridExtra

2.3

2.3

gsubfn

0.7


gtable

0.3.0

0.3.0

gtools

3.8.1


haven

2.1.1

2.4.3

.1

hdf5r

1.2.0


here


1.0.1

hexbin

1.27.3

1.28.

1

2

highr

0.8

0.

8

9

Hmisc

4.4-0


hms

0.5.0

0

1.

5

1.

3

1

htmlTable

1.13.1


htmltools

0.3.6

0.5.

0

2

htmlwidgets

1.3

1.5.

2

4

httpcode


0.3.0

httpuv

1.5.1

1.

5

6.

4

3

httr

1.4.1

1.4.2

hwriter

1.3.2


ica

1.0-2


ids


1.0.1

igraph

1.2.4.1


ini

0.3.1


inline

0.3.15


ipred

0.9-9

0.9-

9

12

IRanges

2.22.2


IRdisplay

0.7


1.0

IRkernel


1.

1.1

2

irlba

2.3.3


isoband


0.2.

2

5

iterators

1.0.12

1.0.13

janitor

1.2.0


jquerylib


0.1.4

jsonlite

1.6.1

1.7.

1

2

kableExtra


1.3.

1

4

KernSmooth

2.23-

152.23-

18

KernSmooth

2.23-

18

2.23-18

20

knitr

1.28

1.

30

36

labeling

0.3

0.4.2

lambda.r

1.2.3


later

0.8.0

1.

1

2.0

.1

lattice

0.20-

380.20-

41

lattice

0.20-

41

0.20-41

45

latticeExtra

0.6-28


lava

1.6.6

1.6.

8.1

10

lazyeval

0.2.2

0.2.2

leiden

0.3.1


lifecycle


1.0.

2.0

1

limma

3.40.6


listenv

0.7.0

0.8.0

lme4

1.1-21

1.1-27.1

lmtest

0.9-37


lobstr


1.1.1

locfit

1.5-9.1


loo

2.1.0


lsei

1.2-0


lubridate

1.7.4

1.

7

8.

9.2

0

magick

2.1


magrittr

1.5

2.0.1

maps

3.3.0

3.

3

4.0

markdown

maptools


1.1-2

markdown

1.1

MASS

7.3-51.5

7.3-53

1.1

MASS

7.3-53.1

7.3-

53

54

Matrix

1.3-2

-17

1.

2

3-

18

Matrix

1.3-2

1.2-18

4

MatrixModels


0.5-0

matrixStats

0.55.0

0.61.0

memoise

1.1.0


metap

1.1


methods

4.0.3

4.0.

3

5

mgcv

1.8-

28

1.8-33

mgcv

1.8-

34

1.8-

33

38

mime

0.7

0.

9

12

minqa

1.2.4

1.2.4

mlr

2.15.0


mnormt

1.5-5


ModelMetrics

1.2.2

1.2.2.2

modelr

0.1.5

0.1.8

multtest

2.40.0


munsell

0.5.0

0.5.0

ncdf4

1.16.1


nlme

3.1-

141

3.1-150

nlme

3.1-7.3-14

152

3.1-150

nloptr

1.2.1

nnet

7.3-12

1.2.2.2

nnet

7.3-15

7.3-

14

16

npsurv

0.4-0


numDeriv

2016.8-1.1

2016.8-1.1

openssl

1.4.1

1.4.

3

5

openxlsx

4.1.0.1

4.2.4

pacman

0.5.1


parallel

4.0.3

4.0

.3

.5

parallelly


1.29.0

parallelMap

1.4


ParamHelpers

1.12


pbapply

1.4-1


pbdZMQ


0.3-

3

6

pbkrtest


0.5.1

phangorn

2.5.5


phytools

0.6-99


pillar

1.4.2

1.6.4

.7

pkgbuild

1.0.8

1.1.0


pkgconfig

2.0.2

2.0.3

pkgload

1.0.2

1.

1

2.

0

4

plogr

0.2.0


plotly

4.9.0

4.

9

10.

2.1

0

plotrix

3.7-6


plyr

1.8.4

1.8.6

png

0.1-7

0.1-7

polynom


1.4-

7

0

praise

1.0.0

1.0.0

prettyunits

1.0.2

1.1.1

pROC


1.

16

18.

2

0

processx

3.4.1

3.

4

5.

4

2

prodlim

2018.04.18

2019.11.13

progress

1.2.2

1.2.2

progressr


0.9.0

promises

1.0.1

1.2.

1

0.1

proto

1.0.0


proxy


0.4-26

pryr

0.1.4

0.1.

4

5

ps

1.3.0

1.

4

6.0

purrr

0.3.4

0.3.4

quadprog

1.5-7


quantmod

0.4-15

0.4.

17

18

quantreg


5.86

qvalue

2.16.0


R.methodsS3

1.7.1


R.oo

1.23.0


R.utils

2.9.0


r2d3


0.2.5

R6

2.4.0

2.5.

0

1

randomForest

4.6-14

4.6-14

RANN

2.6.1


rappdirs

0.3.1

0.3.

1

3

rbokeh

0.5.0

0.5.

1

2

rcmdcheck

1.3.3


RColorBrewer

1.1-2

1.1-2

Rcpp

1.0.4.6

1.0.

5

7

RcppAnnoy

0.0.12


RcppArmadillo

0.9.600.4.0

0.

9

10.

600

7.

4

3.0

RcppEigen

0.3.3.5.0

0.3.3.9.1

RcppParallel

4.4.3


RcppProgress

0.4.1


RCurl

1.98-1.2


Rdpack

0.11-0


readr

1.3.1

2.1.

4.0

1

readxl

1.3.1

1.3.1

recipes

0.1.6

0.1.

15

17

rematch

1.0.1

1.0.1

rematch2

2.1.2

2.1.2

remotes

2.1.1


repr


1.1.

0

3

reprex

0.3.0

2.0.

3.0

1

reshape2

1.4.3

1.4.4

reticulate

1.15

1.

18

22

rex

1.1.2


rhdf5

2.28.1


Rhdf5lib

1.6.3


Rhtslib

1.18.1


rio


0.5.29

rjson


0.2.20

rlang

0.4.6

0.4.

8

12

rmarkdown

1.14

2.

5

11

ROCR

1.0-7


ROTS

1.12.0


roxygen2

7

.1.0

rpart

4

.1

-154.1-15

.0


rpart

4.1-15

4.1-15

RPostgreSQL

0.6-2


rprojroot

1.3-2

2.0.2

Rsamtools

2.2.1


RSpectra

0.15-0


RSQLite

2.1.2


rstan

2.19.2


rstatix


0.7.0

rstudioapi

0.11

0.13

rsvd

1.0.2


rtracklayer

1.44.4


Rtsne

0.15


rversions

2.0.1


rvest

0.3.4

1.0.

3.6

2

S4Vectors

0.26.1


sass


0.4.0

scales

1.0.0

1.1.1

scatterplot3d

0.3-41


sctransform

0.2.0


SDMTools

1.1-221.1


selectr

0.4-1

0.4-2

sessioninfo

1.1.1


Seurat

3.1.0


shape


1.4.

5

6

shiny

1.3.2

1.

5

7.

0

1

sitmo

2.0.1


sm

2.2-5.6


snakecase

0.11.0


snow

0.4-3


sourcetools

0.1.7

0.1.7

sp


1.4-6

sparklyr


1.7.3

SparseM


1.81

spatial


7.3-

12

14

splines

4.0.3

4.0.

3

5

splitstackshape

1.4.8


sqldf

0.4-11


SQUAREM

2017.10-1

2020

2021.

5

1

StanHeaders

2.18.1-10


statmod

1.4.32

1.4.

32

36

stats

4.0.3

4.0.

3

5

stats4

4.0.3

4.0.

3

5

stringi

1.4.3

1.

5

7.

3

6

stringr

1.4.0

1.4.0

SummarizedExperiment

1.18.2


survival

3.

1

2-

12

7

3.2-

7

13

survival3.2-7

svglite

3.2-7


2.0.0

sys

3.2

3.4

systemfonts


1.0.3

tcltk

4.0.3

4.0.

3

5

testthat

2.3.2

3.

0

1.

0

1

tibble

2.1.3

3.

0

1.

4

6

tidyr

0.8.3

1.1.

2

4

tidyselect

0.2.5

1.1.

0

1

tidyverse

1.2.1

1.3.

0

1

timeDate

3043.102

3043.102

tinytex

0.15

0.

27

35

tools

4.0.3

4.0.

3

5

triebeard


0.3.0

tsne

0.1-3


TTR

0.23-4

0.24.2

tximport

1.12.3

tximportData

1.18


tximportData

1.18.0


tzdb


0.2.0

urltools


1.7.3

usethis

1.6.1


utf8

1.1.4

1.

1

2.

4

2

utils

4.0.3

4.0.

3

5

uuid


1.0

.1

-

4

3

uwot

0.1.3


vctrs

0.2.0

0.3.

5

8

vioplot

0.3.2


viridis

0.5.1


viridisLite

0.3.0

0.

3

4.0

vroom


1.5.7

waldo


0.

2

3.

3

1

webshot


0.5.2

whisker

0.3-2

0.4


withr

2.2.0

2.4.3

.0

xfun

0.8

0.

19

28

XML

3.98-1.20


xml2

1.3.2

1.3.

2

3

xopen

1.0.0


xtable

1.8-4

1.8-4

xts

0.11-2

0.12.1

XVector

0.24.0


yaml

2.2.0

2.2.1

zeallot

0.1.0

0.1.0


zip

2.0.3

2.2.0

zlibbioc

1.30.0


zoo

1.8-6

1.8-

8

9



A comprehensive list of packages is available in the RStudio singularity images. Click here to view the list and instructions for using them outside RStudio. 


How to install R packages?

A variety of R packages are installed  however it is recommended that users install packages (newer and updated versions) in their own home directory.

...